ClinVar Miner

Submissions for variant NM_001368067.1(LDB3):c.504T>C (p.Asp168=)

gnomAD frequency: 0.06909  dbSNP: rs76615432
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Total submissions: 15
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine RCV000036848 SCV000060503 benign not specified 2011-06-09 criteria provided, single submitter clinical testing This variant is classified as benign based on its high frequency in control popu lations (18% in Blacks and 4% in Caucasians; LMM unpublished data).
PreventionGenetics, part of Exact Sciences RCV000036848 SCV000306368 benign not specified criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV000403084 SCV000365572 likely benign Myofibrillar myopathy 4 2016-06-14 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV000304611 SCV000365573 benign Dilated cardiomyopathy 1C 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.
Illumina Laboratory Services, Illumina RCV000343074 SCV000365574 likely benign Dilated Cardiomyopathy, Dominant 2016-06-14 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV000395286 SCV000365575 likely benign Myofibrillar Myopathy, Dominant 2016-06-14 criteria provided, single submitter clinical testing
Labcorp Genetics (formerly Invitae), Labcorp RCV000403084 SCV000557533 benign Myofibrillar myopathy 4 2024-02-01 criteria provided, single submitter clinical testing
Athena Diagnostics RCV000036848 SCV000614000 benign not specified 2017-07-21 criteria provided, single submitter clinical testing
Ambry Genetics RCV000618498 SCV000735014 benign Cardiovascular phenotype 2015-06-18 criteria provided, single submitter clinical testing This alteration is classified as benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
GeneDx RCV001707514 SCV001935343 benign not provided 2015-03-03 criteria provided, single submitter clinical testing
Breakthrough Genomics, Breakthrough Genomics RCV001707514 SCV005221821 likely benign not provided criteria provided, single submitter not provided
Cytogenetics- Mohapatra Lab, Banaras Hindu University RCV000304611 SCV001481918 benign Dilated cardiomyopathy 1C 2014-09-11 no assertion criteria provided case-control
Clinical Genetics, Academic Medical Center RCV000036848 SCV001924150 benign not specified no assertion criteria provided clinical testing
Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ RCV000036848 SCV001956552 benign not specified no assertion criteria provided clinical testing
Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) RCV001707514 SCV002035972 likely benign not provided no assertion criteria provided clinical testing

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