ClinVar Miner

Submissions for variant NM_001370259.2(MEN1):c.1594G>T (p.Gly532Cys)

gnomAD frequency: 0.00004  dbSNP: rs587780843
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000123383 SCV000166707 uncertain significance Multiple endocrine neoplasia, type 1 2023-12-30 criteria provided, single submitter clinical testing This sequence change replaces glycine, which is neutral and non-polar, with cysteine, which is neutral and slightly polar, at codon 532 of the MEN1 protein (p.Gly532Cys). This variant is present in population databases (rs587780843, gnomAD 0.003%). This missense change has been observed in individual(s) with symptoms consistent with multiple endocrine neoplasia type 1 (PMID: 10612827, 11836268, 12112656, 30869828, 34326862). ClinVar contains an entry for this variant (Variation ID: 136167). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt MEN1 protein function with a negative predictive value of 95%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV000572942 SCV000673642 likely benign Hereditary cancer-predisposing syndrome 2022-05-04 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Mendelics RCV000123383 SCV000838450 uncertain significance Multiple endocrine neoplasia, type 1 2018-07-02 criteria provided, single submitter clinical testing
Sema4, Sema4 RCV000572942 SCV002530058 uncertain significance Hereditary cancer-predisposing syndrome 2021-11-04 criteria provided, single submitter curation
Baylor Genetics RCV000123383 SCV004194428 uncertain significance Multiple endocrine neoplasia, type 1 2023-10-16 criteria provided, single submitter clinical testing

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