ClinVar Miner

Submissions for variant NM_001370298.3(FGD4):c.1046A>G (p.Asn349Ser)

gnomAD frequency: 0.00014  dbSNP: rs147969494
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000654264 SCV000776154 likely benign Charcot-Marie-Tooth disease type 4 2024-12-10 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV001114310 SCV001272176 uncertain significance Charcot-Marie-Tooth disease type 4H 2018-01-12 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Ambry Genetics RCV002360663 SCV002657328 likely benign Inborn genetic diseases 2023-07-26 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Department of Pathology and Laboratory Medicine, Sinai Health System RCV001114310 SCV006056859 uncertain significance Charcot-Marie-Tooth disease type 4H 2020-07-14 criteria provided, single submitter research

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