ClinVar Miner

Submissions for variant NM_001378120.1(MBD5):c.19T>A (p.Cys7Ser)

gnomAD frequency: 0.00001  dbSNP: rs766104877
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000412834 SCV000492330 uncertain significance not specified 2016-12-02 criteria provided, single submitter clinical testing A variant of uncertain significance has been identified in the MBD5 gene. The C7S variant has not been published as a pathogenic variant, nor has it been reported as a benign variant to our knowledge. The C7S variant is not observed at a significant frequency in large population cohorts (Lek et al., 2016; 1000 Genomes Consortium et al., 2015; Exome Variant Server). The C7S variant is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. This substitution occurs at a position that is conserved in mammals. However, in silico analysis is inconsistent in its predictions as to whether or not the variant is damaging to the protein structure/function. Additionally, to our knowledge, only loss-of-function pathogenic variants in MBD5 have been published in association with epilepsy. Therefore, based on the currently available information, it is unclear whether this variant is a pathogenic variant or a rare benign variant.
Labcorp Genetics (formerly Invitae), Labcorp RCV000817602 SCV000958171 likely benign Intellectual disability, autosomal dominant 1 2024-04-24 criteria provided, single submitter clinical testing
Revvity Omics, Revvity RCV000817602 SCV003808307 uncertain significance Intellectual disability, autosomal dominant 1 2021-07-22 criteria provided, single submitter clinical testing

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