ClinVar Miner

Submissions for variant NM_001378120.1(MBD5):c.4594C>T (p.Arg1532Trp)

gnomAD frequency: 0.00001  dbSNP: rs370659853
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001202014 SCV001373110 uncertain significance Intellectual disability, autosomal dominant 1 2022-06-27 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Not Available"; Align-GVGD: "Class C65"). ClinVar contains an entry for this variant (Variation ID: 933740). This variant has not been reported in the literature in individuals affected with MBD5-related conditions. This variant is present in population databases (rs370659853, gnomAD 0.009%). This sequence change replaces arginine, which is basic and polar, with tryptophan, which is neutral and slightly polar, at codon 1299 of the MBD5 protein (p.Arg1299Trp).
Ambry Genetics RCV002561088 SCV003623842 likely benign Inborn genetic diseases 2022-05-11 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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