Submissions for variant NM_001378454.1(ALMS1):c.9561C>T (p.Thr3187=)

gnomAD frequency: 0.30410  dbSNP: rs11884776

Total submissions: 9

Submitter	RCV	SCV	Clinical significance	Condition	Last evaluated	Review status	Method	Comment
GeneDx	RCV000440420	SCV000524254	benign	not specified	2016-09-09	criteria provided, single submitter	clinical testing	This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine	RCV000440420	SCV000711837	benign	not specified	2016-03-21	criteria provided, single submitter	clinical testing	p.Thr3186Thr in exon 11 of ALMS1: This variant is not expected to have clinical significance because it does not alter an amino acid residue, is not located wit hin the splice consensus sequence, and has been identified in 57.41% (759/1322) of African chromosomes by the 1000 Genomes Project (Phase 3; dbSNP rs11884776).
Labcorp Genetics (formerly Invitae), Labcorp	RCV000860401	SCV001000443	benign	Alstrom syndrome	2024-02-01	criteria provided, single submitter	clinical testing
Genome-Nilou Lab	RCV000860401	SCV001769208	benign	Alstrom syndrome	2021-07-14	criteria provided, single submitter	clinical testing
Ambry Genetics	RCV002379332	SCV002694640	benign	Cardiovascular phenotype	2018-12-21	criteria provided, single submitter	clinical testing	This alteration is classified as benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Breakthrough Genomics, Breakthrough Genomics	RCV004708864	SCV005242473	benign	not provided		criteria provided, single submitter	not provided
Natera, Inc.	RCV000860401	SCV001453035	benign	Alstrom syndrome	2020-09-16	no assertion criteria provided	clinical testing
Clinical Genetics, Academic Medical Center	RCV000440420	SCV001922493	benign	not specified		no assertion criteria provided	clinical testing
Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen	RCV000440420	SCV001962715	benign	not specified		no assertion criteria provided	clinical testing