ClinVar Miner

Submissions for variant NM_001378969.1(KCND3):c.1859C>A (p.Pro620His)

gnomAD frequency: 0.00001  dbSNP: rs758318696
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001969736 SCV002218573 uncertain significance Spinocerebellar ataxia type 19/22 2023-11-24 criteria provided, single submitter clinical testing This sequence change replaces proline, which is neutral and non-polar, with histidine, which is basic and polar, at codon 620 of the KCND3 protein (p.Pro620His). This variant is present in population databases (rs758318696, gnomAD 0.002%). This variant has not been reported in the literature in individuals affected with KCND3-related conditions. ClinVar contains an entry for this variant (Variation ID: 1441909). An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant is likely to be disruptive. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV004043166 SCV005023422 uncertain significance Cardiovascular phenotype 2024-02-04 criteria provided, single submitter clinical testing The p.P620H variant (also known as c.1859C>A), located in coding exon 7 of the KCND3 gene, results from a C to A substitution at nucleotide position 1859. The proline at codon 620 is replaced by histidine, an amino acid with similar properties. This amino acid position is conserved. In addition, this alteration is predicted to be deleterious by in silico analysis. Based on the available evidence, the clinical significance of this alteration remains unclear.

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