ClinVar Miner

Submissions for variant NM_001378969.1(KCND3):c.878G>A (p.Arg293His)

dbSNP: rs1674965278
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001342147 SCV001536058 uncertain significance Spinocerebellar ataxia type 19/22 2022-03-30 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be disruptive. ClinVar contains an entry for this variant (Variation ID: 1038793). This variant has not been reported in the literature in individuals affected with KCND3-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces arginine, which is basic and polar, with histidine, which is basic and polar, at codon 293 of the KCND3 protein (p.Arg293His).
Ambry Genetics RCV002377451 SCV002685145 uncertain significance Cardiovascular phenotype 2021-03-09 criteria provided, single submitter clinical testing The p.R293H variant (also known as c.878G>A), located in coding exon 1 of the KCND3 gene, results from a G to A substitution at nucleotide position 878. The arginine at codon 293 is replaced by histidine, an amino acid with highly similar properties. This amino acid position is highly conserved in available vertebrate species. In addition, this alteration is predicted to be deleterious by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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