ClinVar Miner

Submissions for variant NM_001379081.2(FREM1):c.2896G>A (p.Gly966Ser)

gnomAD frequency: 0.00019  dbSNP: rs373345277
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Illumina Laboratory Services, Illumina RCV001166133 SCV001328472 uncertain significance Oculotrichoanal syndrome 2018-01-12 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Fulgent Genetics, Fulgent Genetics RCV002491478 SCV002781437 uncertain significance Oculotrichoanal syndrome; BNAR syndrome; Trigonocephaly 2 2024-04-05 criteria provided, single submitter clinical testing
GeneDx RCV003442218 SCV004170424 uncertain significance not provided 2023-05-16 criteria provided, single submitter clinical testing In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; Has not been previously published as pathogenic or benign to our knowledge
Ambry Genetics RCV004978075 SCV005581528 uncertain significance Inborn genetic diseases 2024-12-03 criteria provided, single submitter clinical testing The c.2896G>A (p.G966S) alteration is located in exon 18 (coding exon 16) of the FREM1 gene. This alteration results from a G to A substitution at nucleotide position 2896, causing the glycine (G) at amino acid position 966 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.
Labcorp Genetics (formerly Invitae), Labcorp RCV003442218 SCV005765243 likely benign not provided 2024-08-29 criteria provided, single submitter clinical testing

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