ClinVar Miner

Submissions for variant NM_001379200.1(TBX1):c.1421C>T (p.Ala474Val)

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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV002389071 SCV002701665 uncertain significance Cardiovascular phenotype 2023-10-08 criteria provided, single submitter clinical testing The p.A465V variant (also known as c.1394C>T), located in coding exon 8 of the TBX1 gene, results from a C to T substitution at nucleotide position 1394. The alanine at codon 465 is replaced by valine, an amino acid with similar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.
Labcorp Genetics (formerly Invitae), Labcorp RCV003103670 SCV003001317 uncertain significance DiGeorge syndrome 2024-10-23 criteria provided, single submitter clinical testing This sequence change replaces alanine, which is neutral and non-polar, with valine, which is neutral and non-polar, at codon 465 of the TBX1 protein (p.Ala465Val). The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This variant has not been reported in the literature in individuals affected with TBX1-related conditions. ClinVar contains an entry for this variant (Variation ID: 1771594). An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant is likely to be tolerated. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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