ClinVar Miner

Submissions for variant NM_001379286.1(ZNF423):c.1162C>T (p.Arg388Cys)

gnomAD frequency: 0.00001  dbSNP: rs985841675
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001931941 SCV002122847 uncertain significance Nephronophthisis 14 2022-10-03 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with cysteine, which is neutral and slightly polar, at codon 380 of the ZNF423 protein (p.Arg380Cys). This variant is present in population databases (no rsID available, gnomAD 0.003%). This variant has not been reported in the literature in individuals affected with ZNF423-related conditions. ClinVar contains an entry for this variant (Variation ID: 1361750). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt ZNF423 protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV001931941 SCV002802096 uncertain significance Nephronophthisis 14 2022-05-09 criteria provided, single submitter clinical testing
Ambry Genetics RCV004039779 SCV003614161 uncertain significance not specified 2022-04-07 criteria provided, single submitter clinical testing The c.1138C>T (p.R380C) alteration is located in exon 5 (coding exon 4) of the ZNF423 gene. This alteration results from a C to T substitution at nucleotide position 1138, causing the arginine (R) at amino acid position 380 to be replaced by a cysteine (C). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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