ClinVar Miner

Submissions for variant NM_001382.4(DPAGT1):c.243C>T (p.Cys81=)

gnomAD frequency: 0.00034  dbSNP: rs138519099
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000434908 SCV000528470 likely benign not specified 2017-07-31 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Labcorp Genetics (formerly Invitae), Labcorp RCV000650501 SCV000772347 likely benign DPAGT1-congenital disorder of glycosylation; Congenital myasthenic syndrome 13 2024-01-25 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV001102884 SCV001259583 uncertain significance DPAGT1-congenital disorder of glycosylation 2018-01-12 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Athena Diagnostics RCV001288945 SCV001476412 likely benign not provided 2020-04-20 criteria provided, single submitter clinical testing

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