ClinVar Miner

Submissions for variant NM_001384474.1(LOXHD1):c.2871G>A (p.Ser957=)

gnomAD frequency: 0.00482  dbSNP: rs181591912
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine RCV000223393 SCV000269229 benign not specified 2015-08-11 criteria provided, single submitter clinical testing p.Ser957Ser in exon 19 of LOXHD1: This variant is not expected to have clinical significance because it does not alter an amino acid residue and is not located within the splice consensus sequence. It has been identified in 1.53% (43/2804) of African chromosomes by the Exome Aggregation Consortium (ExAC, http://exac.br oadinstitute.org; rs181591912).
GeneDx RCV000840099 SCV000982015 likely benign not provided 2018-03-20 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Labcorp Genetics (formerly Invitae), Labcorp RCV000840099 SCV001024825 benign not provided 2024-10-04 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV001124208 SCV001283135 uncertain significance Autosomal recessive nonsyndromic hearing loss 77 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories RCV001124208 SCV003800234 benign Autosomal recessive nonsyndromic hearing loss 77 2022-07-15 criteria provided, single submitter clinical testing

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