ClinVar Miner

Submissions for variant NM_001386393.1(PANK2):c.1145C>T (p.Ala382Val)

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV003502046 SCV004298024 pathogenic Pigmentary pallidal degeneration 2023-12-21 criteria provided, single submitter clinical testing This sequence change replaces alanine, which is neutral and non-polar, with valine, which is neutral and non-polar, at codon 492 of the PANK2 protein (p.Ala492Val). This variant is present in population databases (no rsID available, gnomAD 0.004%). This missense change has been observed in individual(s) with early onset pantothenate kinase-kssociated neurodegeneration (PMID: 18462962). This variant is also known as c.1145C>T p.A382V. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt PANK2 protein function with a positive predictive value of 95%. For these reasons, this variant has been classified as Pathogenic.

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