ClinVar Miner

Submissions for variant NM_001458.5(FLNC):c.2811+4C>T

gnomAD frequency: 0.00001  dbSNP: rs146715204
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Institute of Human Genetics, University of Leipzig Medical Center RCV001262961 SCV001441020 uncertain significance Hypertrophic cardiomyopathy 26 2019-01-01 criteria provided, single submitter clinical testing
Institute of Human Genetics, University of Leipzig Medical Center RCV001706726 SCV001934392 uncertain significance Distal myopathy with posterior leg and anterior hand involvement 2020-09-04 criteria provided, single submitter clinical testing
Invitae RCV001880049 SCV002203089 uncertain significance Myofibrillar myopathy 5; Distal myopathy with posterior leg and anterior hand involvement; Hypertrophic cardiomyopathy 26; Dilated Cardiomyopathy, Dominant 2022-08-23 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Variants that disrupt the consensus splice site are a relatively common cause of aberrant splicing (PMID: 17576681, 9536098). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant is not likely to affect RNA splicing. ClinVar contains an entry for this variant (Variation ID: 983106). This variant has not been reported in the literature in individuals affected with FLNC-related conditions. This variant is present in population databases (rs146715204, gnomAD 0.007%). This sequence change falls in intron 18 of the FLNC gene. It does not directly change the encoded amino acid sequence of the FLNC protein. It affects a nucleotide within the consensus splice site.
Ambry Genetics RCV002436983 SCV002749249 uncertain significance Cardiovascular phenotype 2019-04-03 criteria provided, single submitter clinical testing The c.2811+4C>T intronic variant results from a C to T substitution 4 nucleotides after coding exon 18 in the FLNC gene. This nucleotide position is poorly conserved in available vertebrate species. Using the BDGP and ESEfinder splice site prediction tools, this alteration is not predicted to have any significant effect on this splice acceptor/donor site; however, direct evidence is unavailable. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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