ClinVar Miner

Submissions for variant NM_001754.5(RUNX1):c.1197C>A (p.Ser399Arg)

dbSNP: rs1555884864
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000540310 SCV000638122 uncertain significance Hereditary thrombocytopenia and hematological cancer predisposition syndrome associated with RUNX1 2023-09-26 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt RUNX1 protein function. ClinVar contains an entry for this variant (Variation ID: 463978). This sequence change replaces serine, which is neutral and polar, with arginine, which is basic and polar, at codon 399 of the RUNX1 protein (p.Ser399Arg). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with RUNX1-related conditions.
Baylor Genetics RCV003470744 SCV004209866 uncertain significance Acute myeloid leukemia 2023-06-30 criteria provided, single submitter clinical testing

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