ClinVar Miner

Submissions for variant NM_001754.5(RUNX1):c.1437C>T (p.Pro479=)

dbSNP: rs1601331827
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
ClinGen Myeloid Malignancy Variant Curation Expert Panel RCV004595550 SCV005088270 likely benign Hereditary thrombocytopenia and hematologic cancer predisposition syndrome 2024-07-11 reviewed by expert panel curation NM_001754.5(RUNX1):c.1437C>T (p.Pro479=) is a synonymous variant that has a SpliceAI Δ score ≤ 0.20 (0.00) (BP4). Evolutionary conservation algorithms predict the site as not being conserved (PhyloP score -0.256331 < 2.0), and the variant is the reference nucleotide in one primate (BP7). This variant is completely absent from all population databases with at least 20x coverage for RUNX1 (PM2_supporting). In summary, this variant meets criteria to be classified as likely benign. ACMG/AMP criteria applied, as specified by the Myeloid Malignancy Variant Curation Expert Panel for RUNX1: BP4, BP7, PM2_supporting.
Labcorp Genetics (formerly Invitae), Labcorp RCV000938321 SCV001084130 likely benign not provided 2018-05-20 criteria provided, single submitter clinical testing

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