ClinVar Miner

Submissions for variant NM_001754.5(RUNX1):c.738G>A (p.Thr246=)

gnomAD frequency: 0.00001  dbSNP: rs546998294
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
ClinGen Myeloid Malignancy Variant Curation Expert Panel RCV003405657 SCV004123225 likely benign Hereditary thrombocytopenia and hematologic cancer predisposition syndrome 2023-11-13 reviewed by expert panel curation NM_001754.5(RUNX1):c.738G>A (p.Thr246=) is a synonymous variant. REVEL score is not applicable and SpliceAI is <=0.20 (BP4). Evolutionary conservation prediction algorithms predict the site as not being conserved (PhyloP score 0.464 < 2.0 or the variant is the reference nucleotide in one primate and/or three mammal species) (BP7). In summary, this variant meets criteria to be classified as likely benign. ACMG/AMP criteria applied, as specified by the Myeloid Malignancy Variant Curation Expert Panel for RUNX1: BP4 and BP7
Labcorp Genetics (formerly Invitae), Labcorp RCV001431800 SCV001634560 likely benign Hereditary thrombocytopenia and hematological cancer predisposition syndrome associated with RUNX1 2024-05-07 criteria provided, single submitter clinical testing
Ambry Genetics RCV004952892 SCV005495318 likely benign Inborn genetic diseases 2024-11-21 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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