ClinVar Miner

Submissions for variant NM_001754.5(RUNX1):c.957T>C (p.Ser319=)

dbSNP: rs2145907165
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
ClinGen Myeloid Malignancy Variant Curation Expert Panel RCV004595602 SCV005088273 likely benign Hereditary thrombocytopenia and hematologic cancer predisposition syndrome 2024-07-11 reviewed by expert panel curation NM_001754.5(RUNX1): c.957T>C (p.Ser319=) is a synonymous variant with a SpliceAI Δ score ≤ 0.20 (0.00) (BP4). Evolutionary conservation algorithms predict the site as not being conserved (PhyloP score 1.10604 < 2.0), and the variant is seen in three mammal species (BP7). This variant is completely absent from all population databases with at least 20x coverage for RUNX1 (PM2_supporting). In summary, this variant meets criteria to be classified as likely benign. ACMG/AMP criteria applied as specified by the Myeloid Malignancy Variant Curation Expert Panel for RUNX1: BP4, BP7, PM2_supporting.
Labcorp Genetics (formerly Invitae), Labcorp RCV001432808 SCV001635587 likely benign Hereditary thrombocytopenia and hematological cancer predisposition syndrome associated with RUNX1 2023-10-23 criteria provided, single submitter clinical testing

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