ClinVar Miner

Submissions for variant NM_001849.4(COL6A2):c.1797G>C (p.Arg599Ser)

gnomAD frequency: 0.00002  dbSNP: rs370858447
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Eurofins Ntd Llc (ga) RCV000348885 SCV000338016 uncertain significance not provided 2015-12-04 criteria provided, single submitter clinical testing
Revvity Omics, Revvity RCV000348885 SCV003834146 uncertain significance not provided 2023-11-30 criteria provided, single submitter clinical testing
Labcorp Genetics (formerly Invitae), Labcorp RCV005055617 SCV005692648 uncertain significance Bethlem myopathy 1A 2024-11-06 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with serine, which is neutral and polar, at codon 599 of the COL6A2 protein (p.Arg599Ser). This variant is present in population databases (rs370858447, gnomAD 0.004%). This variant has not been reported in the literature in individuals affected with COL6A2-related conditions. ClinVar contains an entry for this variant (Variation ID: 162535). Invitae Evidence Modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) indicates that this missense variant is expected to disrupt COL6A2 protein function with a positive predictive value of 80%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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