ClinVar Miner

Submissions for variant NM_001854.4(COL11A1):c.3762+2T>C

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Diagnostics Services (NGS), CSIR - Centre For Cellular And Molecular Biology RCV003482200 SCV004227983 likely pathogenic Stickler syndrome type 2 2023-11-22 criteria provided, single submitter clinical testing The c.3762+2T>C variant is not present in publicly available population databases like 1000 Genomes, EVS, ExAC, gnomAD, Indian Exome Database or our in-house exome database. This variant has neither been published in literature with COL11A1-related conditions nor reported to the clinical databases like Human Genome Mutation Database (HGMD), ClinVar or OMIM, in any affected individuals. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant can disrupt the consensus splice site. In-silico pathogenicity prediction programs like MutationTaster2, CADD, Varsome, Franklin, HSF3.1 etc predicted this variant to be likely deleterious by affecting mRNA splicing however these predictions were not confirmed by published translational studies.

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