ClinVar Miner

Submissions for variant NM_001854.4(COL11A1):c.4416C>A (p.Asp1472Glu)

gnomAD frequency: 0.00284  dbSNP: rs55821405
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Total submissions: 8
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Eurofins Ntd Llc (ga) RCV000179220 SCV000231431 likely benign not specified 2014-10-03 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV000385330 SCV000346375 likely benign Fibrochondrogenesis 1 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as likely benign is not then subjected to further curation. The score for this variant resulted in a classification of likely benign for this disease.
Illumina Laboratory Services, Illumina RCV000318353 SCV000346377 likely benign Stickler syndrome type 2 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as likely benign is not then subjected to further curation. The score for this variant resulted in a classification of likely benign for this disease.
GeneDx RCV000963059 SCV000516874 benign not provided 2018-07-25 criteria provided, single submitter clinical testing This variant is associated with the following publications: (PMID: 15922184, 27353947, 24036952)
Center for Human Genetics, Inc, Center for Human Genetics, Inc RCV000659326 SCV000781137 likely benign Connective tissue disorder 2016-11-01 criteria provided, single submitter clinical testing
Invitae RCV000963059 SCV001110187 benign not provided 2024-01-30 criteria provided, single submitter clinical testing
CeGaT Center for Human Genetics Tuebingen RCV000963059 SCV001147356 likely benign not provided 2024-04-01 criteria provided, single submitter clinical testing COL11A1: PP3, BS2
PreventionGenetics, part of Exact Sciences RCV004539681 SCV004794072 benign COL11A1-related disorder 2021-02-01 criteria provided, single submitter clinical testing This variant is classified as benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications).

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