ClinVar Miner

Submissions for variant NM_001904.4(CTNNB1):c.1723G>C (p.Gly575Arg)

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
3billion RCV005252289 SCV005904358 pathogenic Severe intellectual disability-progressive spastic diplegia syndrome 2023-10-13 criteria provided, single submitter clinical testing The variant is not observed in the gnomAD v2.1.1 dataset. Predicted Consequence/Location: Missense changes are a common disease-causing mechanism. In silico tool predictions suggest damaging effect of the variant on gene or gene product [REVEL: 0.72 (>=0.6, sensitivity 0.68 and specificity 0.92); 3Cnet: 0.60 (>=0.6, sensitivity 0.72 and precision 0.9)]. Different nucleotide change resulting in same amino acid change has been previously reported as pathogenic/likely pathogenic with strong evidence (ClinVar ID: VCV000208674). The variant has been previously reported as de novo in a similarly affected individual (PMID: 33350591). Therefore, this variant is classified as Pathogenic according to the recommendation of ACMG/AMP guideline.

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