Submissions for variant NM_001999.4(FBN2):c.1543T>A (p.Ser515Thr)

dbSNP: rs528255772

Total submissions: 4

Submitter	RCV	SCV	Clinical significance	Condition	Last evaluated	Review status	Method	Comment
GeneDx	RCV000199141	SCV000250157	uncertain significance	not provided	2015-04-15	criteria provided, single submitter	clinical testing	p.Ser515Thr (S515T) TCA>ACA: c.1543 T>A in exon 11 of the FBN2 gene (NM_001999.3) The S515T variant has not been published as a mutation, nor has it been reported as a benign polymorphism to our knowledge. This substitution occurs at a position that is conserved through mammals. The S515T variant was not observed in approximately 6500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. However, the 1000 Genomes Project reports S515T was observed in 2/974 (0.2%) alleles from individuals of South Asian background, indicating it may be a rare (benign) variant in this population. The S515T variant is a conservative amino acid substitution, which is not likely to impact secondary protein structure as these residues share similar properties. In silico analysis predicts this variant likely does not alter the protein structure/function. Additionally, no mutations in nearby residues have been reported in association with an FBN2-related disorder, suggesting this region of the protein may be tolerant of change. Finally, the S515T variant does not affect a Cysteine residue within a calcium-binding EGF-like domain of the FBN2 gene. Cysteine substitutions in the calcium-binding EGF-like domains represent the majority of pathogenic missense changes associated with congenital arachnodactyly (Collod-Beroud et al., 2003). Therefore, based on the currently available information, it is unclear whether this variant is a pathogenic mutation or a rare benign variant. This variant was found in TAADV2-1
Invitae	RCV001086834	SCV000754904	likely benign	Congenital contractural arachnodactyly	2023-12-02	criteria provided, single submitter	clinical testing
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories	RCV000199141	SCV001473512	likely benign	not provided	2020-04-14	criteria provided, single submitter	clinical testing
Genome Diagnostics Laboratory, The Hospital for Sick Children	RCV002277520	SCV002565877	benign	Ehlers-Danlos syndrome	2019-05-01	criteria provided, single submitter	clinical testing