ClinVar Miner

Submissions for variant NM_001999.4(FBN2):c.1543T>A (p.Ser515Thr) (rs528255772)

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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000199141 SCV000250157 uncertain significance not provided 2015-04-15 criteria provided, single submitter clinical testing p.Ser515Thr (S515T) TCA>ACA: c.1543 T>A in exon 11 of the FBN2 gene (NM_001999.3) The S515T variant has not been published as a mutation, nor has it been reported as a benign polymorphism to our knowledge. This substitution occurs at a position that is conserved through mammals. The S515T variant was not observed in approximately 6500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. However, the 1000 Genomes Project reports S515T was observed in 2/974 (0.2%) alleles from individuals of South Asian background, indicating it may be a rare (benign) variant in this population. The S515T variant is a conservative amino acid substitution, which is not likely to impact secondary protein structure as these residues share similar properties. In silico analysis predicts this variant likely does not alter the protein structure/function. Additionally, no mutations in nearby residues have been reported in association with an FBN2-related disorder, suggesting this region of the protein may be tolerant of change. Finally, the S515T variant does not affect a Cysteine residue within a calcium-binding EGF-like domain of the FBN2 gene. Cysteine substitutions in the calcium-binding EGF-like domains represent the majority of pathogenic missense changes associated with congenital arachnodactyly (Collod-Beroud et al., 2003). Therefore, based on the currently available information, it is unclear whether this variant is a pathogenic mutation or a rare benign variant. This variant was found in TAADV2-1
Invitae RCV001086834 SCV000754904 likely benign Congenital contractural arachnodactyly 2020-03-05 criteria provided, single submitter clinical testing
ARUP Laboratories, Molecular Genetics and Genomics,ARUP Laboratories RCV001286889 SCV001473512 likely benign none provided 2020-04-14 criteria provided, single submitter clinical testing

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