ClinVar Miner

Submissions for variant NM_002047.4(GARS1):c.1809+1G>A

dbSNP: rs1554340340
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001296628 SCV001485599 uncertain significance Charcot-Marie-Tooth disease type 2 2020-08-22 criteria provided, single submitter clinical testing This sequence change affects a donor splice site in intron 14 of the GARS gene. It is expected to disrupt RNA splicing and likely results in an absent or disrupted protein product. This variant is not present in population databases (ExAC no frequency). This variant has been observed in individual(s) with clinical features of Charcot-Marie-Tooth disease (Invitae) and in individual(s) referred for genetic testing for neuropathy (PMID: 25614874). ClinVar contains an entry for this variant (Variation ID: 637501). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site, but this prediction has not been confirmed by published transcriptional studies. The current clinical and genetic evidence is not sufficient to establish whether loss-of-function variants in GARS cause disease. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Inherited Neuropathy Consortium RCV000789708 SCV000929084 pathogenic Charcot-Marie-Tooth disease no assertion criteria provided literature only
Inherited Neuropathy Consortium Ii, University Of Miami RCV003447237 SCV004174570 uncertain significance Charcot-Marie-Tooth disease type 2D 2016-01-06 no assertion criteria provided literature only

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