ClinVar Miner

Submissions for variant NM_002103.5(GYS1):c.217G>A (p.Val73Met)

gnomAD frequency: 0.00001  dbSNP: rs370035815
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001246577 SCV001419939 uncertain significance Glycogen storage disease due to muscle and heart glycogen synthase deficiency 2023-03-17 criteria provided, single submitter clinical testing This sequence change replaces valine, which is neutral and non-polar, with methionine, which is neutral and non-polar, at codon 73 of the GYS1 protein (p.Val73Met). This variant is present in population databases (rs370035815, gnomAD 0.006%). This variant has not been reported in the literature in individuals affected with GYS1-related conditions. ClinVar contains an entry for this variant (Variation ID: 970915). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Not Available"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Not Available". The methionine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV003346412 SCV004074513 uncertain significance Inborn genetic diseases 2023-06-28 criteria provided, single submitter clinical testing The c.217G>A (p.V73M) alteration is located in exon 2 (coding exon 2) of the GYS1 gene. This alteration results from a G to A substitution at nucleotide position 217, causing the valine (V) at amino acid position 73 to be replaced by a methionine (M). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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