ClinVar Miner

Submissions for variant NM_002294.3(LAMP2):c.316G>A (p.Ala106Thr)

dbSNP: rs1305798857
Minimum review status: Collection method:
Minimum conflict level:
ClinVar version:
Total submissions: 2
Download table as spreadsheet
Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001367042 SCV001563374 uncertain significance Danon disease 2020-06-29 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Tolerated"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0". The threonine amino acid residue is found in multiple mammalian species, suggesting that this missense change does not adversely affect protein function. These predictions have not been confirmed by published functional studies and their clinical significance is uncertain. This variant is not present in population databases (ExAC no frequency). This sequence change replaces alanine with threonine at codon 106 of the LAMP2 protein (p.Ala106Thr). The alanine residue is weakly conserved and there is a small physicochemical difference between alanine and threonine. This variant has not been reported in the literature in individuals with LAMP2-related conditions.
Ambry Genetics RCV002322343 SCV002610042 uncertain significance Cardiovascular phenotype 2021-10-12 criteria provided, single submitter clinical testing The p.A106T variant (also known as c.316G>A), located in coding exon 3 of the LAMP2 gene, results from a G to A substitution at nucleotide position 316. The alanine at codon 106 is replaced by threonine, an amino acid with similar properties. This amino acid position is poorly conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. Neither the University of Utah nor the National Institutes of Health independently verfies the submitted information. If you have questions about the information contained on this website, please see a health care professional.