ClinVar Miner

Submissions for variant NM_002335.4(LRP5):c.263A>G (p.Lys88Arg)

gnomAD frequency: 0.00095  dbSNP: rs78219242
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Eurofins Ntd Llc (ga) RCV000175720 SCV000227257 uncertain significance not provided 2017-09-01 criteria provided, single submitter clinical testing
GeneDx RCV000175720 SCV000968966 likely benign not provided 2018-05-11 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Invitae RCV000175720 SCV001628743 likely benign not provided 2024-01-12 criteria provided, single submitter clinical testing
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories RCV000175720 SCV004562140 uncertain significance not provided 2023-02-21 criteria provided, single submitter clinical testing The LRP5 c.263A>G; p.Lys88Arg variant (rs78219242) is not reported in the literature in individuals with LRP5-associated disease, however it was detected in an individual affected with early-onset high myopia (Gonzalez-Iglesias 2022). This variant is also reported in ClinVar (Variation ID: 195167). This variant is found in the African/African-American population with an allele frequency of 0.30% (77/24946 alleles) in the Genome Aggregation Database. Computational analyses are uncertain whether this variant is neutral or deleterious (REVEL: 0.56). Due to limited information, the clinical significance of this variant is uncertain at this time. References: Gonzalez-Iglesias E et al. Next-Generation Sequencing Screening of 43 Families with Non-Syndromic Early-Onset High Myopia: A Clinical and Genetic Study. Int J Mol Sci. 2022 Apr 11;23(8):4233. PMID: 35457050.

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