ClinVar Miner

Submissions for variant NM_002335.4(LRP5):c.3148G>A (p.Val1050Ile)

gnomAD frequency: 0.00001  dbSNP: rs577519439
Minimum review status: Collection method:
Minimum conflict level:
ClinVar version:
Total submissions: 4
Download table as spreadsheet
Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001052449 SCV001216659 uncertain significance not provided 2025-01-01 criteria provided, single submitter clinical testing This sequence change replaces valine, which is neutral and non-polar, with isoleucine, which is neutral and non-polar, at codon 1050 of the LRP5 protein (p.Val1050Ile). This variant is present in population databases (rs577519439, gnomAD 0.02%). This variant has not been reported in the literature in individuals affected with LRP5-related conditions. ClinVar contains an entry for this variant (Variation ID: 848647). Invitae Evidence Modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) indicates that this missense variant is not expected to disrupt LRP5 protein function with a negative predictive value of 95%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV005005004 SCV002792262 uncertain significance Bone mineral density quantitative trait locus 1; Exudative vitreoretinopathy 4; Worth disease; Autosomal dominant osteopetrosis 1; Osteoporosis with pseudoglioma; Polycystic liver disease 4 with or without kidney cysts 2023-12-29 criteria provided, single submitter clinical testing
Ambry Genetics RCV002553283 SCV003726860 uncertain significance Inborn genetic diseases 2022-02-11 criteria provided, single submitter clinical testing The c.3148G>A (p.V1050I) alteration is located in exon 14 (coding exon 14) of the LRP5 gene. This alteration results from a G to A substitution at nucleotide position 3148, causing the valine (V) at amino acid position 1050 to be replaced by an isoleucine (I). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.
Breakthrough Genomics, Breakthrough Genomics RCV001052449 SCV005190407 uncertain significance not provided criteria provided, single submitter not provided

The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. Neither the University of Utah nor the National Institutes of Health independently verfies the submitted information. If you have questions about the information contained on this website, please see a health care professional.