ClinVar Miner

Submissions for variant NM_002485.5(NBN):c.1474C>T (p.Gln492Ter)

dbSNP: rs587782130
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV000130673 SCV000185559 pathogenic Hereditary cancer-predisposing syndrome 2022-06-20 criteria provided, single submitter clinical testing The p.Q492* pathogenic mutation (also known as c.1474C>T), located in coding exon 11 of the NBN gene, results from a C to T substitution at nucleotide position 1474. This changes the amino acid from a glutamine to a stop codon within coding exon 11. This alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. As such, this alteration is interpreted as a disease-causing mutation.
GeneDx RCV000480769 SCV000570348 likely pathogenic not provided 2021-10-26 criteria provided, single submitter clinical testing Nonsense variant predicted to result in protein truncation or nonsense mediated decay in a gene for which loss-of-function is a known mechanism of disease; Not observed at significant frequency in large population cohorts (Lek et al., 2016); This variant is associated with the following publications: (PMID: 28152038)
Labcorp Genetics (formerly Invitae), Labcorp RCV000529643 SCV000634229 pathogenic Microcephaly, normal intelligence and immunodeficiency 2024-09-23 criteria provided, single submitter clinical testing This sequence change creates a premature translational stop signal (p.Gln492*) in the NBN gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in NBN are known to be pathogenic (PMID: 9590180, 16415040). This variant is present in population databases (rs587782130, gnomAD 0.0009%). This variant has not been reported in the literature in individuals affected with NBN-related conditions. ClinVar contains an entry for this variant (Variation ID: 141946). For these reasons, this variant has been classified as Pathogenic.
Genome-Nilou Lab RCV000529643 SCV002045330 pathogenic Microcephaly, normal intelligence and immunodeficiency 2021-11-07 criteria provided, single submitter clinical testing
Baylor Genetics RCV003467153 SCV004199706 pathogenic Aplastic anemia 2024-02-02 criteria provided, single submitter clinical testing

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