ClinVar Miner

Submissions for variant NM_002528.7(NTHL1):c.690G>A (p.Val230=)

gnomAD frequency: 0.00001  dbSNP: rs756156987
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV001765457 SCV001998149 uncertain significance not provided 2019-08-22 criteria provided, single submitter clinical testing Not observed at a significant frequency in large population cohorts (Lek et al., 2016); Has not been previously published as pathogenic or benign to our knowledge; In-silico analysis, which includes splice predictors and evolutionary conservation, is inconclusive as to whether the variant alters gene splicing. In the absence of RNA/functional studies, the actual effect of this sequence change is unknown.
Labcorp Genetics (formerly Invitae), Labcorp RCV001765457 SCV003447263 likely benign not provided 2022-05-01 criteria provided, single submitter clinical testing
Ambry Genetics RCV003163858 SCV003856406 likely benign Hereditary cancer-predisposing syndrome 2023-03-05 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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