ClinVar Miner

Submissions for variant NM_002617.4(PEX10):c.724C>T (p.Arg242Trp)

gnomAD frequency: 0.00003  dbSNP: rs745818681
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001340614 SCV001534433 uncertain significance Peroxisome biogenesis disorder, complementation group 7 2022-10-04 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with tryptophan, which is neutral and slightly polar, at codon 262 of the PEX10 protein (p.Arg262Trp). The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This variant has not been reported in the literature in individuals affected with PEX10-related conditions. ClinVar contains an entry for this variant (Variation ID: 1037458). Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C15"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Natera, Inc. RCV001831066 SCV002094113 uncertain significance Zellweger spectrum disorders 2020-01-02 no assertion criteria provided clinical testing

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