ClinVar Miner

Submissions for variant NM_002691.4(POLD1):c.2669C>T (p.Ala890Val)

gnomAD frequency: 0.00011  dbSNP: rs146344351
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000473913 SCV000547514 uncertain significance Colorectal cancer, susceptibility to, 10 2024-01-27 criteria provided, single submitter clinical testing This sequence change replaces alanine, which is neutral and non-polar, with valine, which is neutral and non-polar, at codon 890 of the POLD1 protein (p.Ala890Val). This variant is present in population databases (rs146344351, gnomAD 0.04%), and has an allele count higher than expected for a pathogenic variant. This variant has not been reported in the literature in individuals affected with POLD1-related conditions. ClinVar contains an entry for this variant (Variation ID: 407969). An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant is likely to be tolerated. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
GeneDx RCV001704557 SCV000569149 likely benign not provided 2021-04-06 criteria provided, single submitter clinical testing This variant is associated with the following publications: (PMID: 27748766, 29056344)
Ambry Genetics RCV002525561 SCV003724583 likely benign Inborn genetic diseases 2022-08-02 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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