ClinVar Miner

Submissions for variant NM_002739.5(PRKCG):c.1738C>T (p.Arg580Trp)

gnomAD frequency: 0.00009  dbSNP: rs149266855
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Athena Diagnostics RCV001288722 SCV001476034 likely benign not provided 2020-01-02 criteria provided, single submitter clinical testing
Ambry Genetics RCV002541793 SCV003726670 uncertain significance Inborn genetic diseases 2022-09-14 criteria provided, single submitter clinical testing The c.1738C>T (p.R580W) alteration is located in exon 16 (coding exon 16) of the PRKCG gene. This alteration results from a C to T substitution at nucleotide position 1738, causing the arginine (R) at amino acid position 580 to be replaced by a tryptophan (W). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV004699272 SCV005202559 uncertain significance not specified 2024-07-12 criteria provided, single submitter clinical testing Variant summary: PRKCG c.1738C>T (p.Arg580Trp) results in a non-conservative amino acid change located in the Protein kinase domain (IPR000719) of the encoded protein sequence. Four of five in-silico tools predict a damaging effect of the variant on protein function. The variant allele was found at a frequency of 7.6e-05 in 250754 control chromosomes. This frequency is not significantly higher than estimated for a pathogenic variant in PRKCG causing Spinocerebellar Ataxia 14, allowing no conclusion about variant significance. To our knowledge, no occurrence of c.1738C>T in individuals affected with Spinocerebellar Ataxia 14 and no experimental evidence demonstrating its impact on protein function have been reported. ClinVar contains an entry for this variant (Variation ID: 994942). Based on the evidence outlined above, the variant was classified as uncertain significance.

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