ClinVar Miner

Submissions for variant NM_002769.5(PRSS1):c.54del (p.Phe18fs)

dbSNP: rs779352917
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001877747 SCV002138524 uncertain significance Hereditary pancreatitis 2021-09-29 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This variant has not been reported in the literature in individuals with PRSS1-related conditions. The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the ExAC database. This sequence change creates a premature translational stop signal (p.Phe18Leufs*24) in the PRSS1 gene. It is expected to result in an absent or disrupted protein product. However, the current clinical and genetic evidence is not sufficient to establish whether loss-of-function variants in PRSS1 cause disease.
Ambry Genetics RCV001877747 SCV002650167 uncertain significance Hereditary pancreatitis 2024-02-15 criteria provided, single submitter clinical testing The c.54delT variant, located in coding exon 2 of the PRSS1 gene, results from a deletion of one nucleotide at nucleotide position 54, causing a translational frameshift with a predicted alternate stop codon (p.F18Lfs*24). This alteration is expected to result in premature protein truncation or nonsense-mediated mRNA decay. However, loss of function of PRSS1 has not been clearly established as a mechanism of disease. Based on the available evidence, the clinical significance of this alteration remains unclear.

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