ClinVar Miner

Submissions for variant NM_002834.5(PTPN11):c.1685C>T (p.Pro562Leu)

dbSNP: rs2038884191
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001936510 SCV002201362 uncertain significance RASopathy 2021-09-03 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt PTPN11 protein function. This variant has not been reported in the literature in individuals affected with PTPN11-related conditions. This variant is not present in population databases (ExAC no frequency). This sequence change replaces proline with leucine at codon 562 of the PTPN11 protein (p.Pro562Leu). The proline residue is highly conserved and there is a moderate physicochemical difference between proline and leucine.
Fulgent Genetics, Fulgent Genetics RCV002484614 SCV002788290 uncertain significance Noonan syndrome 1; Juvenile myelomonocytic leukemia; Metachondromatosis; LEOPARD syndrome 1 2021-10-05 criteria provided, single submitter clinical testing

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