Submissions for variant NM_002900.3(RBP3):c.962C>T (p.Thr321Ile)

gnomAD frequency: 0.00003  dbSNP: rs376854254

Total submissions: 3

Submitter	RCV	SCV	Clinical significance	Condition	Last evaluated	Review status	Method	Comment
Illumina Laboratory Services, Illumina	RCV001105735	SCV001262732	uncertain significance	Retinitis pigmentosa	2018-01-13	criteria provided, single submitter	clinical testing	This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Labcorp Genetics (formerly Invitae), Labcorp	RCV001201499	SCV001372571	uncertain significance	not provided	2022-08-23	criteria provided, single submitter	clinical testing	This variant has not been reported in the literature in individuals affected with RBP3-related conditions. This variant is present in population databases (rs376854254, gnomAD 0.01%). This sequence change replaces threonine, which is neutral and polar, with isoleucine, which is neutral and non-polar, at codon 321 of the RBP3 protein (p.Thr321Ile). ClinVar contains an entry for this variant (Variation ID: 208299). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Tolerated"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Class C0").
ClinVar Staff, National Center for Biotechnology Information (NCBI)	RCV000206892	SCV000244044	uncertain significance	Retinitis pigmentosa 66	2013-06-27	no assertion criteria provided	literature only