ClinVar Miner

Submissions for variant NM_003002.4(SDHD):c.314+1G>A (rs1555187083)

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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000806583 SCV000946588 likely pathogenic Carney-Stratakis syndrome; Pheochromocytoma; Paragangliomas 1; Cowden syndrome 3 2018-10-09 criteria provided, single submitter clinical testing This sequence change affects a donor splice site in the last intron (intron 3) of the SDHD gene. While this is not anticipated to result in nonsense mediated decay, it likely alters RNA splicing and results in a disrupted protein product. This variant is not present in population databases (ExAC no frequency). Disruption of the splice site has been observed in several individuals and families affected with paraganglioma (PMID: 16317055, 19454582, 18551016, 19351833). ClinVar contains an entry for this variant (Variation ID: 438436). Nucleotide substitutions within the consensus splice site are a relatively common cause of aberrant splicing (PMID: 17576681, 9536098). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site, but this prediction has not been confirmed by published transcriptional studies. In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic.
Ambry Genetics RCV001018787 SCV001180064 pathogenic Hereditary cancer-predisposing syndrome 2018-04-23 criteria provided, single submitter clinical testing Alterations at the canonical donor/acceptor sites (+/- 1, 2) without other strong (b-level) evidence supporting pathogenicity;Detected in individual satisfying established diagnostic critera for classic disease without a clear mutation;In silico models in agreement (deleterious) and/or completely conserved position in appropriate species;Rarity in general population databases (dbsnp, esp, 1000 genomes)
Section on Medical Neuroendocrinolgy,National Institutes of Health RCV000505333 SCV000599542 pathogenic Hereditary Paraganglioma-Pheochromocytoma Syndromes no assertion criteria provided research

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