ClinVar Miner

Submissions for variant NM_003002.4(SDHD):c.421T>C (p.Tyr141His)

gnomAD frequency: 0.00001  dbSNP: rs1394514096
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV002233358 SCV000830118 uncertain significance Carney-Stratakis syndrome; Pheochromocytoma; Paragangliomas with sensorineural hearing loss; Cowden syndrome 3 2023-11-13 criteria provided, single submitter clinical testing This sequence change replaces tyrosine, which is neutral and polar, with histidine, which is basic and polar, at codon 141 of the SDHD protein (p.Tyr141His). This variant is present in population databases (no rsID available, gnomAD 0.0009%). This variant has not been reported in the literature in individuals affected with SDHD-related conditions. ClinVar contains an entry for this variant (Variation ID: 578342). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed at Invitae for this missense variant, however the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on SDHD protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV000764955 SCV000896128 uncertain significance Carney-Stratakis syndrome; Pheochromocytoma; Mitochondrial complex II deficiency, nuclear type 1; Paragangliomas 1 2018-10-31 criteria provided, single submitter clinical testing
Quest Diagnostics Nichols Institute San Juan Capistrano RCV000986023 SCV001134820 uncertain significance not provided 2018-12-05 criteria provided, single submitter clinical testing
Ambry Genetics RCV003165869 SCV003906818 uncertain significance Hereditary cancer-predisposing syndrome 2023-03-11 criteria provided, single submitter clinical testing The p.Y141H variant (also known as c.421T>C), located in coding exon 4 of the SDHD gene, results from a T to C substitution at nucleotide position 421. The tyrosine at codon 141 is replaced by histidine, an amino acid with similar properties. This amino acid position is conserved. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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