ClinVar Miner

Submissions for variant NM_003036.4(SKI):c.2168C>A (p.Ala723Asp)

gnomAD frequency: 0.00001  dbSNP: rs1264586139
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV002315198 SCV000739616 uncertain significance Familial thoracic aortic aneurysm and aortic dissection 2016-08-17 criteria provided, single submitter clinical testing The p.A723D variant (also known as c.2168C>A), located in coding exon 7 of the SKI gene, results from a C to A substitution at nucleotide position 2168. The alanine at codon 723 is replaced by aspartic acid, an amino acid with dissimilar properties. This variant was not reported in population based cohorts in the following databases: Database of Single Nucleotide Polymorphisms (dbSNP), NHLBI Exome Sequencing Project (ESP), and 1000 Genomes Project. In the ESP, this variant was not observed in 3637 samples (7274 alleles) with coverage at this position. This amino acid position is poorly conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this variant remains unclear.
Labcorp Genetics (formerly Invitae), Labcorp RCV000688423 SCV000816033 uncertain significance Shprintzen-Goldberg syndrome 2024-02-18 criteria provided, single submitter clinical testing This sequence change replaces alanine, which is neutral and non-polar, with aspartic acid, which is acidic and polar, at codon 723 of the SKI protein (p.Ala723Asp). This variant is present in population databases (no rsID available, gnomAD 0.002%). This variant has not been reported in the literature in individuals affected with SKI-related conditions. ClinVar contains an entry for this variant (Variation ID: 520155). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt SKI protein function with a negative predictive value of 95%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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