ClinVar Miner

Submissions for variant NM_003072.5(SMARCA4):c.2505+4G>A

gnomAD frequency: 0.00001  dbSNP: rs745383210
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV000573710 SCV000672267 uncertain significance Hereditary cancer-predisposing syndrome 2024-05-02 criteria provided, single submitter clinical testing The c.2505+4G>A intronic variant results from a G to A substitution 4 nucleotides after coding exon 16 in the SMARCA4 gene. This nucleotide position is poorly conserved in available vertebrate species. In silico splice site analysis predicts that this alteration will not have any significant effect on splicing. Loss-of-function variants in SMARCA4 are known to cause rhabdoid tumor predisposition syndrome including small cell carcinoma of the ovary-hypercalcemic type (SCCOHT); however, such associations with neurodevelopmental disorders are exceedingly rare (Kosho T et al. Am J Med Genet C Semin Med Genet. 2014 Sep;166C(3):262-75; Jelinic P et al. Nat Genet. 2014 May;46(5):424-6). Based on the supporting evidence, the association of this alteration with rhabdoid tumor predisposition syndrome is unknown; however, the association of this alteration with Coffin-Siris syndrome is unlikely.
Labcorp Genetics (formerly Invitae), Labcorp RCV000646877 SCV000768662 likely benign Rhabdoid tumor predisposition syndrome 2 2024-12-04 criteria provided, single submitter clinical testing
Genome-Nilou Lab RCV001809654 SCV002056837 uncertain significance Intellectual disability, autosomal dominant 16 2021-07-15 criteria provided, single submitter clinical testing

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