ClinVar Miner

Submissions for variant NM_003073.5(SMARCB1):c.1070C>G (p.Thr357Arg)

dbSNP: rs1555881567
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Equipe Genetique des Anomalies du Developpement, Université de Bourgogne RCV000677690 SCV000803837 likely pathogenic Intellectual disability, autosomal dominant 15 2016-06-21 criteria provided, single submitter clinical testing
3billion RCV000677690 SCV002521770 likely pathogenic Intellectual disability, autosomal dominant 15 2022-05-22 criteria provided, single submitter clinical testing The variant is not observed in the gnomAD v2.1.1 dataset. Missense changes are a common disease-causing mechanism. In silico tool predictions suggest damaging effect of the variant on gene or gene product (REVEL: 0.79; 3Cnet: 0.98). Same nucleotide change resulting in same amino acid change has been previously reported to be associated with SMARCB1 related disorder (ClinVar ID: VCV000559897). A different missense change at the same codon (p.Thr357Ile) has been reported as pathogenic/likely pathogenic with strong evidence (ClinVar ID: VCV000580796). Therefore, this variant is classified as likely pathogenic according to the recommendation of ACMG/AMP guideline.
Ambry Genetics RCV002422457 SCV002719382 uncertain significance Hereditary cancer-predisposing syndrome 2019-09-27 criteria provided, single submitter clinical testing The p.T357R variant (also known as c.1070C>G), located in coding exon 8 of the SMARCB1 gene, results from a C to G substitution at nucleotide position 1070. The threonine at codon 357 is replaced by arginine, an amino acid with similar properties. This amino acid position is highly conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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