ClinVar Miner

Submissions for variant NM_003119.4(SPG7):c.1325-6C>T

gnomAD frequency: 0.00006  dbSNP: rs371986686
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000434380 SCV000514734 likely benign not specified 2017-12-27 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Labcorp Genetics (formerly Invitae), Labcorp RCV000474127 SCV000562810 likely benign Hereditary spastic paraplegia 7 2024-07-07 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV000474127 SCV001278082 uncertain significance Hereditary spastic paraplegia 7 2018-01-12 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Ambry Genetics RCV002524805 SCV003547694 uncertain significance Inborn genetic diseases 2021-05-03 criteria provided, single submitter clinical testing The c.1325-6C>T intronic alteration consists of a C to T substitution 6 nucleotides before coding exon 10 in the SPG7 gene. Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.
CeGaT Center for Human Genetics Tuebingen RCV003456395 SCV004184622 likely benign not provided 2023-11-01 criteria provided, single submitter clinical testing SPG7: BP4, BS2

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