ClinVar Miner

Submissions for variant NM_003190.5(TAPBP):c.209-3C>T

dbSNP: rs2536778660
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV002634005 SCV003519547 uncertain significance MHC class I deficiency 2024-02-24 criteria provided, single submitter clinical testing This sequence change falls in intron 2 of the TAPBP gene. It does not directly change the encoded amino acid sequence of the TAPBP protein. It affects a nucleotide within the consensus splice site. This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with TAPBP-related conditions. ClinVar contains an entry for this variant (Variation ID: 2198949). Variants that disrupt the consensus splice site are a relatively common cause of aberrant splicing (PMID: 17576681, 9536098). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant is not likely to affect RNA splicing. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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