ClinVar Miner

Submissions for variant NM_003334.4(UBA1):c.1147A>T (p.Ile383Phe)

gnomAD frequency: 0.00001  dbSNP: rs1341394275
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001363701 SCV001559825 uncertain significance Infantile-onset X-linked spinal muscular atrophy 2022-10-09 criteria provided, single submitter clinical testing This sequence change replaces isoleucine, which is neutral and non-polar, with phenylalanine, which is neutral and non-polar, at codon 383 of the UBA1 protein (p.Ile383Phe). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0"). ClinVar contains an entry for this variant (Variation ID: 1055089). This variant has not been reported in the literature in individuals affected with UBA1-related conditions. This variant is not present in population databases (gnomAD no frequency).
Ambry Genetics RCV002456559 SCV002613279 uncertain significance Inborn genetic diseases 2023-06-30 criteria provided, single submitter clinical testing The c.1147A>T (p.I383F) alteration is located in exon 11 (coding exon 10) of the UBA1 gene. This alteration results from a A to T substitution at nucleotide position 1147, causing the isoleucine (I) at amino acid position 383 to be replaced by a phenylalanine (F). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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