ClinVar Miner

Submissions for variant NM_003640.5(ELP1):c.3493C>T (p.Leu1165Phe)

dbSNP: rs144301886
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001880224 SCV002209258 uncertain significance not provided 2021-09-24 criteria provided, single submitter clinical testing This sequence change replaces leucine with phenylalanine at codon 1165 of the ELP1 protein (p.Leu1165Phe). The leucine residue is highly conserved and there is a small physicochemical difference between leucine and phenylalanine. This variant is not present in population databases (ExAC no frequency). This variant has not been reported in the literature in individuals with ELP1-related conditions. ClinVar contains an entry for this variant (Variation ID: 989519). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Deleterious"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0". The phenylalanine amino acid residue is found in multiple mammalian species, suggesting that this missense change does not adversely affect protein function. These predictions have not been confirmed by published functional studies and their clinical significance is uncertain. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Natera, Inc. RCV001277369 SCV001464316 uncertain significance Familial dysautonomia 2020-09-07 no assertion criteria provided clinical testing

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