ClinVar Miner

Submissions for variant NM_003722.5(TP63):c.110G>A (p.Arg37Gln)

gnomAD frequency: 0.00002  dbSNP: rs754361670
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001922562 SCV002176289 uncertain significance TP63-Related Spectrum Disorders 2023-06-25 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed at Invitae for this missense variant, however the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on TP63 protein function. ClinVar contains an entry for this variant (Variation ID: 1398414). This variant has not been reported in the literature in individuals affected with TP63-related conditions. This variant is present in population databases (rs754361670, gnomAD 0.02%), and has an allele count higher than expected for a pathogenic variant. This sequence change replaces arginine, which is basic and polar, with glutamine, which is neutral and polar, at codon 37 of the TP63 protein (p.Arg37Gln).
Fulgent Genetics, Fulgent Genetics RCV002482760 SCV002778760 uncertain significance ADULT syndrome; Ankyloblepharon-ectodermal defects-cleft lip/palate syndrome; Ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3; Limb-mammary syndrome; Rapp-Hodgkin syndrome; Split hand-foot malformation 4; Orofacial cleft 8 2021-10-27 criteria provided, single submitter clinical testing

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