ClinVar Miner

Submissions for variant NM_003742.4(ABCB11):c.150+3A>C

dbSNP: rs387906354
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Fulgent Genetics, Fulgent Genetics RCV002482836 SCV002789073 likely pathogenic Benign recurrent intrahepatic cholestasis type 2; Progressive familial intrahepatic cholestasis type 2 2021-08-06 criteria provided, single submitter clinical testing
Invitae RCV003555949 SCV004292640 pathogenic not provided 2023-06-20 criteria provided, single submitter clinical testing This sequence change falls in intron 4 of the ABCB11 gene. It does not directly change the encoded amino acid sequence of the ABCB11 protein. It affects a nucleotide within the consensus splice site. This variant is not present in population databases (gnomAD no frequency). This variant has been observed in individual(s) with progressive familial intrahepatic cholestasis (PMID: 16039748, 27114171, 28733223). In at least one individual the data is consistent with being in trans (on the opposite chromosome) from a pathogenic variant. ClinVar contains an entry for this variant (Variation ID: 6593). Variants that disrupt the consensus splice site are a relatively common cause of aberrant splicing (PMID: 17576681, 9536098). Studies have shown that this variant is associated with altered splicing resulting in multiple RNA products (PMID: 27114171). For these reasons, this variant has been classified as Pathogenic.
OMIM RCV000006972 SCV000027168 pathogenic Progressive familial intrahepatic cholestasis type 2 2005-09-01 no assertion criteria provided literature only

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