ClinVar Miner

Submissions for variant NM_003742.4(ABCB11):c.506G>A (p.Arg169His)

gnomAD frequency: 0.00023  dbSNP: rs200870815
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Eurofins Ntd Llc (ga) RCV000728289 SCV000855842 uncertain significance not provided 2018-08-10 criteria provided, single submitter clinical testing
Fulgent Genetics, Fulgent Genetics RCV002477682 SCV002781927 uncertain significance Benign recurrent intrahepatic cholestasis type 2; Progressive familial intrahepatic cholestasis type 2 2021-07-24 criteria provided, single submitter clinical testing
Labcorp Genetics (formerly Invitae), Labcorp RCV000728289 SCV003454184 likely benign not provided 2024-03-16 criteria provided, single submitter clinical testing
Neuberg Centre For Genomic Medicine, NCGM RCV003338772 SCV004048533 uncertain significance Benign recurrent intrahepatic cholestasis type 2 criteria provided, single submitter clinical testing The missense variant in c.506G>A (p.Arg169His) in ABCB11 gene has not been reported previously as a pathogenic variant nor as a benign variant, to our knowledge. The p.Arg169His variant is reported with the allele frequency of 0.007527% in gnomAD and is novel (not in any individuals) in 1000 Genomes. This variant has been reported to the ClinVar database as uncertain significance. The amino acid Arg at position 169 is changed to a His changing protein sequence and it might alter its composition and physico-chemical properties. The variant is predicted to be damaging by SIFT and the residue is variable across species. For these reasons, this variant has been classified as Uncertain Significance. In the absence of another reportable variant, the molecular diagnosis is not confirmed.
Breakthrough Genomics, Breakthrough Genomics RCV000728289 SCV005188007 uncertain significance not provided criteria provided, single submitter not provided

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