ClinVar Miner

Submissions for variant NM_003924.4(PHOX2B):c.639C>G (p.Gly213=)

gnomAD frequency: 0.00039  dbSNP: rs17879258
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Total submissions: 9
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001450090 SCV000288024 likely benign Haddad syndrome 2025-01-06 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV000295449 SCV000449541 likely benign Neuroblastoma, susceptibility to, 2 2017-04-27 criteria provided, single submitter clinical testing This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). Publications were found based on this search. The evidence from the literature, in combination with allele frequency data from public databases where available, was sufficient to determine this variant is unlikely to cause disease. Therefore, this variant is classified as likely benign.
Illumina Laboratory Services, Illumina RCV000227589 SCV000449542 likely benign Congenital central hypoventilation 2017-04-27 criteria provided, single submitter clinical testing This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). No publications were found based on this search. Allele frequency data from public databases allowed determination this variant is unlikely to cause disease. Therefore, this variant is classified as likely benign.
Ambry Genetics RCV000574763 SCV000674210 likely benign Hereditary cancer-predisposing syndrome 2014-06-23 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
GeneDx RCV000608879 SCV000732554 likely benign not specified 2017-06-26 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Genetic Services Laboratory, University of Chicago RCV000608879 SCV002064875 likely benign not specified 2021-12-16 criteria provided, single submitter clinical testing
Sema4, Sema4 RCV000574763 SCV002535401 likely benign Hereditary cancer-predisposing syndrome 2020-12-18 criteria provided, single submitter curation
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV000608879 SCV002548295 benign not specified 2022-05-06 criteria provided, single submitter clinical testing
CeGaT Center for Human Genetics Tuebingen RCV003437019 SCV004150031 likely benign not provided 2023-09-01 criteria provided, single submitter clinical testing PHOX2B: BP4, BP7

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